Soil Microbiome of the Cold Habitats: Trends and Application
DOI:
https://doi.org/10.55544/sjmars.1.1.6Keywords:
Temperate, Community, Soil microbiome, Cold habitatAbstract
Bacterial communities in hard temperate are very important for low temperature diversity of microbes is vital for sustainability of an healthy ecosystem. Study of these microbes is very important as these can be source of various cold tolerant biomolecules. It has been observed that human interference in exclusive niches can disturb natural populations of a cold niche. Undisturbed niches of cold regions can be utilized for bioprospecting new biomolecules and can be a vital resource for new genomes. This review is focused on microbes and their habitat in which they can be studied for the benefit of mankind and shall provide information regarding variation in diversity and composition of bacterial communities. This will also give an idea about the association between bacterial community structures and soil physicochemical variables in cold-desert habitats.
References
Singh RN, Gaba S, Yadav AN, Gaur P, Gulati S, et al. (2016) First, High quality draft genome sequence of a plant growth promoting and Cold Active Enzymes producing psychrotrophic Arthrobacter agilis strain L77. Stand Genomic Sci 11(1): 54.
Abd-Alla, M.H., El-Sayed, E.-S.A., Rasmey, A.-H.M., 2013. Indole-3-acetic acid (IAA) production by Streptomyces atrovirens isolated from rhizospheric soil in Egypt. J. Biol. Earth Sci. 3, B182–B193.
Abdelkader, M.S., Philippon, T., Asenjo, J.A., Bull, A.T., Goodfellow, M., Ebel, R., et al., 2018. Asenjonamides A–C, antibacterial metabolites isolated from Streptomyces asenjonii strain KNN 42. f from an extreme-hyper arid Atacama Desert soil. J. Antibiot. 71, 425–431.
Ahemad, M., 2012. Implications of bacterial resistance against heavy metals in
Ahmad, F., Ahmad, I., Altaf, M., Khan, M., Shouche, Y.S., 2019. Characterization of Paenibacillus durus (PNF16) a new isolate and its synergistic interaction with other isolated rhizobacteria in promoting growth and yield of chickpea. J. Microbiol. Biotechnol. Food Sci. 345–350 2019.
Ahmad, Z., Wu, J., Chen, L., Dong, W., 2017. Isolated Bacillus subtilis strain 330-2 and its antagonistic genes identified by the removing PCR. Sci. Rep. 7, 1–13.
Ai-Jawhari, I.F.H., 2014. Ability of some soil fungi in biodegradation of petroleum
Aislabie, J., Deslippe, J.R., Dymond, J., 2013. Soil microbes and their contribution to soil services. In: Dymond, J.R. (Ed.), Ecosystem Services in New Zealand–conditions and Trends. Manaaki Whenua Press, Lincoln New Zealand143-161.
Akter, S., Huq, M.A., 2018. Luteibacter pinisoli sp. nov., a casein degrading bacterium isolated from rhizospheric soil of Pinus koraiensis. Arch. Microbiol. 200, 1017–1023. https://doi.org/10.1007/s00203-018-1515-1.
Al-Hawash, A.B., Alkooranee, J.T., Abbood, H.A., Zhang, J., Sun, J., Zhang, X., et al., 2018. Isolation and characterization of two crude oil-degrading fungi strains from Rumaila oil field. Iraq. Biotechnol. Rep. 17, 104–109. https://doi.org/10.1016/j.btre. 2017.12.006.
Auman AJ, Breezee JL, Gosink JJ, Kämpfer P, Staley JT (2006) Psychromonas ingrahamii sp. nov., a novel gas vacuolate, psychrophilic bacterium isolated from Arctic polar sea ice. Int J Syst Evol Microbiol 56(5): 1001-1007.
bioremediation: a review. IIOAB 3, 39–46.
Chaturvedi P, Prabahar V, Manorama R, Pindi PK, Bhadra B, et al. (2008) Exiguobacterium soli sp. nov., a psychrophilic bacterium from the McMurdo Dry Valleys, Antarctica. Int J Syst Evol Microbiol 58(10): 2447-2453.
Gerday C, Aittaleb M, Bentahir M, Chessa JP, Claverie P, et al. (2000) Cold-adapted enzymes: from fundamentals to biotechnology. Trend Biotechnol 18(3): 103-107.
Gosink J, Herwig R, Staley J (1997) Octadecabacter arcticus gen. nov., sp. nov., and O. antarcticus, sp. nov., nonpigmented, psychrophilic gas vacuolate bacteria from polar sea ice and water. Syst Appl Microbiol 20(3): 356-365.
Groudieva T, Kambourova M, Yusef H, Royter M, Grote R, et al. (2004) Diversity and cold-active hydrolytic enzymes of culturable bacteria associated with Arctic sea ice, Spitzbergen. Extremophiles 8(6): 475- 488.
Høj L, Olsen RA, Torsvik VL: Effects of temperature on the diversity and community structure of known methanogenic groups and other archaea in high Arctic peat. ISME J 2008, 2:37-48.
Hough DW, Danson MJ. Extremozymes. Curr Opin Chem Biol. 1999; 3(1):39-46. https://doi.org/10.1016/S1367-5931(99)80008-8
hydrocarbon. J. Appl. Environ. Microbiol. 2, 46–52.
Jackson RB, Canadell JG, Le Quere C, Andrew RM, Korsbakken JI, Peters GP, Nakicenovic N: Reaching peak emissions. Nat Clim Chang 2016, 6:7-10.
Kumar V, Singh P, Jorquera MA, Sangwan P, Kumar P, et al. (2013) Isolation of phytase-producing bacteria from Himalayan soils and their effect on growth and phosphorus uptake of Indian mustard (Brassica juncea). World J Microbiol Biotechnol 29(8): 1361-1369.
Kumar V, Yadav AN, Saxena A, Sangwan P, Dhaliwal HS (2016) Unravelling Rhizospheric Diversity and Potential of Phytase Producing Microbes. SM J Biol 2(1): 1009.
López NI, Pettinari MJ, Stackebrandt E, Tribelli PM, Põtter M, et al. (2009) Pseudomonas extremaustralis sp. nov., a poly (3-hydroxybutyrate) producer isolated from an Antarctic environment. Curr Microbiol 59(5): 514-519.
Reddy G, Pradhan S, Manorama R, Shivaji S (2010) Cryobacterium roopkundense sp. nov., a psychrophilic bacterium isolated from glacial soil. Int J Syst Evol Microbiol 60(4): 866-870.
Sahay H, Yadav AN, Singh AK, Singh S, Kaushik R, Saxena AK. Hot springs of Indian Himalayas: Potential sources of microbial diversity and thermostable hydrolytic enzymes. 3 Biotech. 2017; 7(2):1-11. https://doi.org/10.1007/s13205-017-0762-1
Sarmiento F, Peralta R, Blamey JM. Cold and hot extremozymes: industrial relevance and current trends. Front Bioeng Biotechnol. 2015; 3:148. https://doi.org/10.3389/fbioe.2015.00148
Saxena AK, Yadav AN, Rajawat M, Kaushik R, Kumar R, Kumar M, Prasanna R, Shukla L. Microbial diversity of extreme regions: An unseen heritage and wealth. Indian J Plant Genet Resour. 2016; 29(3):246-248. https://doi.org/10.5958/0976-1926.2016.00036.X
Shivaji S, Ray M, Rao NS, Saisree L, Jagannadham M, et al. (1992) Sphingobacterium antarcticus sp. nov., a psychrotrophic bacterium from the soils of Schirmacher Oasis, Antarctica. Int J Syst Evol Microbiol 42(1): 102-106.
Shukla L, Suman A, Yadav AN, Verma P, Saxena AK (2016) Syntrophic microbial system for ex-situ degradation of paddy straw at low temperature under controlled and natural environment. J Appl Biol Biotechnol 4(2): 30-37.
Van Trappen S, Vandecandelaere I, Mergaert J, Swings J (2005) Flavobacterium fryxellicola sp. nov. and Flavobacterium psychrolimnae sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 55(2): 769-772.
Verma P, Yadav AN, Khannam KS, Panjiar N, Kumar S, et al. (2015) Assessment of genetic diversity and plant growth promoting attributes of psychrotolerant bacteria allied with wheat (Triticum aestivum) from the northern hills zone of India. Ann Microbiol 65(4): 1885-1899.
Yadav AN, Gulati S, Sharma D, Singh RN, Rajawat MVS, Kumar R, Dey R, Pal KK, Kaushik R, Saxena AK. Seasonal variations in culturable archaea and their plant growth-promoting attributes predict their role in the establishment of vegetation in the Rann of Kutch. Biologia. 2019; 74(8):1031-1043. https://doi.org/10.2478/s11756-019- 00259-2
Yadav AN, Kour D, Rana KL, Yadav N, Singh B, Chauhan VS, Rastegari AA, Hesham AE-L, Gupta VK: Metabolic Engineering to Synthetic Biology of Secondary Metabolites Production. In: New and Future Developments in Microbial Biotechnology and Bioengineering. Edited by Gupta VK, Pandey A. Amsterdam: Elsevier; 2019: 279-320. https://doi.org/10.1016/B978-0-444-63504-4.00020-7
Yadav AN, Sachan S, Kaushik R, Saxena AK (2014) Cold tolerant microbes from Indian Himalayas: diversity and potential applications in biotechnology and agriculture. In: Proceeding of 84th Annual Session of NASI and Symposium on “Desert Science-Opportunities and challenges”, pp. 17.
Yadav AN, Sachan SG, Verma P, Kaushik R, Saxena AK (2016) Cold active hydrolytic enzymes production by psychrotrophic Bacilli isolated from three sub-glacial lakes of NW Indian Himalayas. J Basic Microbiol 56(3): 294-307.
Yadav AN, Sachan SG, Verma P, Saxena AK (2016) Bioprospecting of plant growth promoting psychrotrophic Bacilli from cold desert of north western Indian Himalayas. Indian J Exp Biol 52(2): 142-150.
Yadav AN, Verma P, Kumar M, Pal KK, Dey R, Gupta A, Padaria JC, Gujar GT, Kumar S, Suman A, et al. Diversity and phylogenetic profiling of niche-specific Bacilli from extreme environments of India. Ann Microbiol. 2015; 65(2):611-629. https://doi.org/10.1007/s13213- 014-0897-9
Yadav AN, Verma P, Sachan S, Kaushik R, Saxena AK (2013) Diversity and phylogeny of low temperature plant growth promoting fluorescent Pseudomonas isolated from cold desert of north western Himalayas. In: Proceeding of 54th AMI and International symposium on “Frontier Discoveries and Innovations in Microbiology and its Interdisciplinary Relevance” pp. 397-397.
Yadav AN, Verma P, Sachan S, Kaushik R, Saxena AK (2015) Mitigation of cold stress for growth and yield of wheat (Triticum aestivum L.) by psychrotrophic pseudomonads from cold deserts of Indian Himalayas. In: Proceeding of 56th AMI and International symposium on “Emerging Discoveries in Microbiology”.
Yadav AN, Verma P, Sachan S, Kaushik R, Saxena AK (2016) Microbiome of Indian Himalayan regions: Molecular diversity, phylogenetic profiling and biotechnological applications. In: Proceeding of 86th Annual Session of NASI & Symposium on “Science, Technology and Entrepreneurship for Human Welfare in The Himalayan Region” pp. 58.
Yakimov MM, Giuliano L, Gentile G, Crisafi E, Chernikova TN, et al. (2003) Oleispira antarctica gen. nov., sp. nov., a novel hydrocarbonoclastic marine bacterium isolated from Antarctic coastal sea water. Int J Syst Evol Microbiol 53(3): 779-785.
Zhang DC, Busse HJ, Liu HC, Zhou YG, Schinner F, et al. (2011) Sphingomonas glacialis sp. nov., a psychrophilic bacterium isolated from alpine glacier cryoconite. Int J Syst Evol Microbiol 61(3): 587-591.
Zhou Z, Jiang F, Wang S, Peng F, Dai J, et al. (2012) Pedobacter arcticus sp. nov., a facultative psychrophile isolated from Arctic soil. Int J Syst Evol Microbiol 62(8): 1963-1969.
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