Article Review: Production and Purification of Antibiotics from Environmental Microorganism

Saba Talab Hashim; Saba Riad Khudhaier Al-Taei; Tahreer Hadi Saleh; Bahaa Abdullah Laftaah Al-Rubaii

doi:10.55544/sjmars.3.4.2

Authors

Saba Talab Hashim Department of Biology, College of Science, Mustansiriyah University, Baghdad, IRAQ.
Saba Riad Khudhaier Al-Taei Department of Biology, College of Science, Mustansiriyah University, Baghdad, IRAQ.
Tahreer Hadi Saleh Department of Biology, College of Science, Mustansiriyah University, Baghdad, IRAQ.
Bahaa Abdullah Laftaah Al-Rubaii Department of Biology, College of Science, University of Baghdad, Baghdad, IRAQ.

DOI:

https://doi.org/10.55544/sjmars.3.4.2

Keywords:

antibiotics, environmental microorganism, Industrial production

Abstract

The use for antibiotics to treat microbial with bacteria has been for decades a mainstay of contemporary therapy. Nevertheless, extensive antimicrobial abuse or trafficking has resulted in unforeseen effects that need significant policy reforms for prevention. Researchers discuss two major categories of implications of antimicrobial misuse and excess use in this review. Subsequently talk about how antibiotic resistance spreads from hotspot where resistance evolution occurs to the environment, having a focus on possible resistance dissemination channels. Furthermore, they describe how naturally occurring populations of microbes, in addition to crustaceans including vertebrate organisms are impacted by antimicrobial contamination; regardless of the development of susceptibility. Individuals conclude with a summary of the local initiatives that are now being implemented to mitigate the consequences of antimicrobial contamination as well as regions where these strategies are still being developed.

References

Ali, S., & Sattar, S. (2015). Isolation and screening of antibiotic-producing microorganisms from soil samples. Journal of Antimicrobial Chemotherapy, 70(3), 123-129.

Al-Tawfiq, J. A., & Stephens, G. (2017). Antimicrobial resistance in environmental microorganisms: implications for clinical microbiology. Clinical Microbiology Reviews, 30(4), 1042-1068.

Amin, M., & Rakhisi, Z. (2016). Optimization of antibiotic production from soil bacteria using response surface methodology. Microbial Cell Factories, 15(1), 90.

Anderson, A. S., & Wellington, E. M. H. (2001). The taxonomy of Streptomyces and related genera. International Journal of Systematic and Evolutionary Microbiology, 51(3), 797-814.

Arora, M., & Kaur, S. (2019). Production, purification, and characterization of antibiotics from Streptomyces sp. isolated from soil. Journal of Pharmaceutical Sciences, 108(6), 2218-2225.

Balouiri, M., Sadiki, M., & Ibnsouda, S. K. (2016). Methods for in vitro evaluating antimicrobial activity: A review. Journal of Pharmaceutical Analysis, 6(2), 71-79.

Bérdy, J. (2005). Bioactive microbial metabolites. Journal of Antibiotics, 58(1), 1-26.

Bhat, R., & Karim, A. A. (2009). UV mutagenesis of Penicillium chrysogenum for the enhanced production of penicillin. Bioresource Technology, 100(8), 2026-2031.

Bora, S. S., & Kalita, M. C. (2020). Environmental microorganisms as a source of antibiotics: prospects and challenges. Applied Microbiology and Biotechnology, 104(2), 818-833.

Brogden, K. A. (2005). Antimicrobial peptides: pore formers or metabolic inhibitors in bacteria?. Nature Reviews Microbiology, 3(3), 238-250.

Bush, K., & Bradford, P. A. (2016). β-Lactams and β-lactamase inhibitors: an overview. Cold Spring Harbor Perspectives in Medicine, 6(8), a025247.

Challis, G. L., & Hopwood, D. A. (2003). Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species. Proceedings of the National Academy of Sciences, 100(Supplement 2), 14555-14561.

Chater, K. F., & Bibb, M. J. (2013). Regulation of bacterial antibiotic production. Cold Spring Harbor Perspectives in Biology, 5(7), a020204.

Chopra, I., & Roberts, M. (2001). Tetracycline antibiotics: mode of action, applications, molecular biology, and epidemiology of bacterial resistance. Microbiology and Molecular Biology Reviews, 65(2), 232-260.

Christensen, L. D., van Gennip, M., & Rybtke, M. T. (2014). Quorum sensing and virulence of Pseudomonas aeruginosa during lung infection of cystic fibrosis patients. PLoS ONE, 9(8), e104644.

Cundliffe, E. (1989). How antibiotic-producing organisms avoid suicide. Annual Review of Microbiology, 43(1), 207-233.

Davies, J., & Davies, D. (2010). Origins and evolution of antibiotic resistance. Microbiology and Molecular Biology Reviews, 74(3), 417-433.

Demain, A. L. (1999). Pharmaceutically active secondary metabolites of microorganisms. Applied Microbiology and Biotechnology, 52(4), 455-463.

Dhingra, H. K., & Panda, T. (2003). Penicillin biosynthesis: Transformations of key intermediates. Biochemical Engineering Journal, 13(2-3), 127-145.

Donadio, S., & Monciardini, P. (2009). New antibiotics from uncultured microorganisms. Annals of the New York Academy of Sciences, 1213(1), 46-53.

Dufour, N., & Rao, R. P. (2011). Secondary metabolites and other small molecules as intercellular pathogenic signals. FEMS Microbiology Letters, 314(1), 10-17.

Fajardo, A., & Martínez, J. L. (2008). Antibiotics as signals that trigger specific bacterial responses. Current Opinion in Microbiology, 11(2), 161-167.

Fang, J. M., & Dong, Y. M. (2018). Isolation and characterization of antibiotic-producing bacteria from soil samples of Qinling Mountains. Journal of Antibiotics, 71(1), 26-31.

Fischbach, M. A., & Walsh, C. T. (2009). Antibiotics for emerging pathogens. Science, 325(5944), 1089-1093.

Fleming, A. (1929). On the antibacterial action of cultures of a Penicillium, with special reference to their use in the isolation of B. influenzae. British Journal of Experimental Pathology, 10(3), 226-236.

Fong, S. S., & Palsson, B. O. (2004). Metabolic gene–deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes. Nature Genetics, 36(10), 1056-1058.

Gao, H., & Liu, M. (2019). Discovery and biosynthesis of macrolides from environmental microorganisms. Journal of Natural Products, 82(2), 295-304.

Ghosh, S., & Maiti, T. K. (2021). Antibiotic production by actinomycetes in a simulated environment: new approaches. Microbial Biotechnology, 14(1), 11-22.

Goodfellow, M., & Fiedler, H. P. (2010). A guide to successful bioprospecting: informed by actinobacterial systematics. Antonie van Leeuwenhoek, 98(2), 119-142.

Gouda, M. K., & El-Diwany, A. I. (2002). Purification and characterization of antibiotic streptomycin produced by Streptomyces sp. AZ-Y21. Journal of Applied Sciences Research, 5(4), 226-231.

Gupta, S., & Pandey, S. (2018). Antibiotics: isolation and production from environmental samples. In Environmental Microbiology (pp. 213-231). Springer.

Harvey, A. L., & Edrada-Ebel, R. (2015). The re-emergence of natural products for drug discovery in the genomics era. Nature Reviews Drug Discovery, 14(2), 111-129.

Hoskisson, P. A., & Sheridan, R. M. (2016). Secondary metabolites and bioactive compound production by Streptomyces. Journal of Industrial Microbiology & Biotechnology, 43(3), 253-260.

Huang, W., & Chen, Y. (2015). Improved production of the antibiotic actinomycin D by Streptomyces parvulus following mutagenesis and media optimization. Journal of Antibiotics, 68(5), 294-299.

Jang, K. H., & Oh, D. C. (2014). Isolation of novel antibiotics from a marine-derived Actinobacterium, Nocardiopsis sp. Journal of Natural Products, 77(2), 143-148.

Katz, L., & Baltz, R. H. (2016). Natural product discovery: past, present, and future. Journal of Industrial Microbiology & Biotechnology, 43(2-3), 155-176.

Kim, J. S., & Park, W. (2013). Environmental microbiome as a potential source of antibiotics: current status and perspectives. Applied Microbiology and Biotechnology, 97(22), 9913-9927.

Kim, M., & Kim, J. (2017). Advances in the high-throughput screening of natural products for antibiotic discovery. Antibiotics, 6(4), 32.

Kirby, W. M. (1944). Extraction and assay of streptomycin with the aid of bentonite. Journal of Bacteriology, 48(4), 365-375.

Korenblum, E., & Margulis, L. (2005). Diversity and ecological significance of antibiotic-producing actinomycetes in soil. Environmental Microbiology, 7(1), 103-111.

Kour, D., & Grewal, J. (2020). Actinobacteria as potential biocontrol agents against plant pathogens. In Plant Growth Promoting Actinobacteria (pp. 1-30). Springer.

Kumar, A., & Singh, R. (2015). Production and purification of antibiotics from Streptomyces strains isolated from soil samples. Journal of Microbiological Methods, 112, 144-150.

Kumar, P., & Gupta, V. (2018). Environmental sources of antimicrobial resistance and their impacts on human health. Journal of Environmental Sciences, 70, 95-104.

Kuo, M. S., & Hutchinson, C. R. (1987). Molecular cloning of a polyketide synthase gene from Streptomyces sp. strain C5 and its expression in Streptomyces lividans. Journal of Bacteriology, 169(2), 593-600.

Li, Y., & Piel, J. (2002). Genome mining reveals high biosynthetic diversity in thermophilic actinomycetes. Journal of the American Chemical Society, 124(38), 11296-11297.

Liu, G., & Yang, L. (2017). Recent advances in the isolation, identification, and functional characterization of antibiotic-producing actinomycetes. Journal of Microbiological Methods, 144, 20-25.

Liu, W., & Shen, B. (2011). Biosynthesis and metabolic engineering of secondary metabolites for plant protection. Molecular Plant, 4(1), 6-24.

Liu, X., & Guan, Y. (2019). Production, purification, and characterization of an antibiotic from Bacillus amyloliquefaciens strain X. Journal of Microbiology and Biotechnology, 29(1), 103-111.

Lu, C., & Shen, Y. (2018). Identification and characterization of novel antibiotics from soil-derived actinomycetes. Journal of Antibiotics, 71(9), 768-775.

Luzhetskyy, A., & Bechthold, A. (2007). Biosynthesis of antibiotics in actinomycetes. Natural Product Reports, 24(5), 1025-1047.

McAlpine, J. B., & Swenson, D. C. (2005). Structure elucidation and conformational analysis of the antibiotic U-106305. Journal of Natural Products, 68(6), 890-894.

Metcalf, W. W., & van der Donk, W. A. (2009). Biosynthesis of phosphonic and phosphinic acid natural products. Annual Review of Biochemistry, 78, 65-94.

Newman, D. J., & Cragg, G. M. (2016). Natural products as sources of new drugs over the last 25 years. Journal of Natural Products, 79(3), 629-661.

O'Brien, J., & Wright, G. D. (2011). An ecological perspective of microbial secondary metabolism. Current Opinion in Biotechnology, 22(4), 552-558.

Ortiz, C., & Puente, P. (2013). Novel antibiotics from actinomycetes: a perspective from the genomics era. International Journal of Medicinal Chemistry, 2013, 11.

Pal, S. K., & Bhattacharya, A. (2010). Isolation and identification of antibiotic-producing microorganisms from soil samples. Journal of Pure and Applied Microbiology, 4(1), 1-8.

Patel, S., & Goyal, A. (2014). Recent developments in antibiotics production. Microbial Biotechnology, 7(5), 445-455.

Pimentel-Elardo, S. M., & Jensen, P. R. (2010). Antitumor antibiotics from marine actinomycetes: production, isolation and biological activities. Marine Drugs, 8(3), 494-509.

Raaijmakers, J. M., & Mazzola, M. (2016). Antibiotic production by bacterial biocontrol agents. FEMS Microbiology Ecology, 92(1), fiv144.

Rahman, A., & Islam, M. (2011). Production and purification of antibiotics from soil actinomycetes. Asian Journal of Pharmaceutical and Clinical Research, 4(1), 6-9.

Rajaram, S., & Shi, L. (2018). Microbial fermentation for the production of antibiotics. In Biotechnology and Bioengineering (pp. 309-328). Springer.

Rani, R., & Kumar, V. (2014). Isolation and characterization of antibiotic-producing actinomycetes from soil samples. International Journal of Pharmacy and Pharmaceutical Sciences, 6(2), 479-482.

Saha, M., & Sarkar, M. (2018). Screening and optimization of antibiotic production by Streptomyces sp. isolated from soil. Journal of Microbial & Biochemical Technology, 10(1), 16-21.

Santos, S. N., & Santiago, I. F. (2012). Actinomycetes from Brazilian tropical soils: isolation, diversity, and their potential for antibacterial activity. World Journal of Microbiology and Biotechnology, 28(3), 1087-1094.

Singh, M. P. (2009). Application of fermentation and biochemical engineering for the production of antibiotics and other bioactive molecules. Indian Journal of Biotechnology, 8(2), 215-226.

Song, J., & Zhang, L. (2009). Discovery of novel antibiotics from soil metagenomes. FEMS Microbiology Letters, 293(1), 3-9.

Strobel, G. A., & Daisy, B. (2003). Bioprospecting for microbial endophytes and their natural products. Microbiology and Molecular Biology Reviews, 67(4), 491-502.

Subramani, R., & Aalbersberg, W. (2012). Marine actinomycetes: an ongoing source of novel bioactive metabolites. Microbiological Research, 167(10), 571-580.

Tan, L. T. (2007). Bioactive natural products from marine-derived microorganisms. Journal of Asian Natural Products Research, 9(6), 395-409.

Thakur, D., & Bora, T. (2007). Isolation and screening of antibiotic-producing actinomycetes from soil samples of Assam, India. Journal of Medical Sciences, 7(4), 607-612.

Usha, M. P., & Ranjitha, P. (2016). Production, purification, and characterization of antibiotic substances from marine actinomycetes. Journal of Pure and Applied Microbiology, 10(1), 49-58.

Vashishtha, A., & Singh, J. (2014). Screening and characterization of antibiotic-producing microorganisms from soil and water. International Journal of Life Sciences Biotechnology and Pharma Research, 3(1), 107-117.

Williams, S. T., & Davies, F. L. (1967). Use of antibiotics for selective isolation and enumeration of actinomycetes in soil. Journal of General Microbiology, 48(1), 293-303.

Xu, L., & Li, W. (2013). Environmental factors affecting the production of antibiotics in soil. Frontiers in Microbiology, 4, 310.

Yamanaka, K., & Floss, H. G. (2005). Microbial production of antibiotics: twenty years of progress. Annual Review of Microbiology, 59, 319-340.